NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000148

Scaffold Ga0335078_10000148


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000148 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)116795
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (63.46%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000749Metagenome / Metatranscriptome908Y
F000978Metagenome / Metatranscriptome815Y
F007996Metagenome / Metatranscriptome341Y
F011701Metagenome / Metatranscriptome288Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1000014829F000749GAGGMKIRNTTPRTAAHVTIRVSGKLFQGHLAYLDQLVESATDCQLWPLLSLSQLEELDRPALSYLIDGEDRRFSLISCPTFIRDRMDHERERAVA
Ga0335078_1000014850F011701AGGAGGMQFQRLSRAGLVCSLLTTLLFTTVAATSTSGREFSGYFDISGVHEQGELVQVTLHLQLFNQSDADAKSVIVTLIDSSPLMTFRGNFQPVKVWKSHQFIQMSQEFTVTKREFQEWMAPPAQPNLVILFQDSKGMPWQRGAQISRRPLVRAQD
Ga0335078_1000014863F000978N/AMFAQTVGVRPRQKSAASRICFCPQCAVSLAMGLPPEGALNMAAWDMIRELVSAEPSLNQAAWEGLRGIVGLLTSGKDESSNGRMRRAG
Ga0335078_1000014873F007996GGAMGKRILFVAGSVLLLLAGYLAGTHNSIFAYDVKHGDVPKSYGKLVTAFSDSIGTGLVFEDAAGVIRFVSVTGMKEGELARYDKTPVHGGIPLSFGHLVSAVVNHGQTGLVFEDDHGAIRFVTLTGTVESELQRN
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