NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000633

Scaffold Ga0335078_10000633


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000633 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54178
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (76.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005311Metagenome / Metatranscriptome405Y
F045224Metagenome / Metatranscriptome153Y
F092540Metagenome107Y
F098100Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1000063313F005311GGAGGMSSGICGSALVRAANAMLTALGGDQVSLLLPGAATASDAAGQLGLVDPGVQDVVITPVVAHTRPTTNLGPMRRVEFTLPASVLEAQLPGLGMASVEDLFNAVLGLVYDGDLFHIEAVVTENFAGTAYFYVVTAVE
Ga0335078_1000063317F045224GGAMSDDALGATRAGFGGNKQVRAATYTTKDFQLEVLGQLADMQGLTEGMRESLANELGKNREQGKLLRFDGRTLIAIGAIALSLTGYVLQDARNTSKRDAEIETMKARVTRLEEIAATNTEGRVRTEVQLGELREGQAEIKRMIEEHDNASKKIFSGNK
Ga0335078_1000063318F092540AGGAGMSTASTTIISNLKNATLPTANTMKAANAAGIDAAGMLWLAQCKALELKTCLTMLVRATDGADPNLATLNNILASLV
Ga0335078_1000063322F098100GGAMSLVFAFLGWKAPEWRMPLDYDAMISRSIPFAVAWTALLTICLWRCKLRGLWLLVGASMALYWPIWLIFNHFPSCYYSGNCS
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