NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10001019

Scaffold Ga0335078_10001019


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10001019 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42683
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (78.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000749Metagenome / Metatranscriptome908Y
F009018Metagenome / Metatranscriptome324Y
F043112Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1000101912F043112AGGAGMAKNHYVTKPKRRNRSGKRKDSKRIAANMARIRQLEQSASSTQK
Ga0335078_1000101915F000749GAGGMSANMLPRIAGPTVTIRVSGKLFEGHLMYLEQLIQTAAECLLWPLLSLACVEELDHAALFYLANGEGRSFSIVSCPTFIREHISREATRAVA
Ga0335078_1000101940F009018GAGGMIKHARYIAVAFVVAAFALTSTAMAQSYTGDWQATVSNSQRDNGTYCISLTDNGSEGPPHSGEAQMIPSKGESPGYFSVVNGLITITFSFPSGEGDCCDYQTFTAKASNGQIGNGVFNYMGITDIGVLTFGKKGSCSN
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