NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10003706

Scaffold Ga0335078_10003706


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10003706 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22724
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007700Metagenome / Metatranscriptome346Y
F076301Metagenome118Y
F080295Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1000370614F080295GGAMGKGCDIGYAPAINSCEGANSVDACTVAALDAITAFAVPNPNCSSQSQPVFSGLVALQVTPQSGSLSLLRTGKVYFANPFSRRRESN
Ga0335078_1000370618F007700N/AMVTLAERTEQSSWVDEGTRHHKVTFAICSPIIPCMADLVALPAAWVVKCKKCGCTVTCRAIDSQREHAEPEKAEPAPNDTVIVTCSCCWTAYRYSPNEVSKGPPSPSRTCAARGSSIIPDTNNNNKEAKNPNSVLLIAASLIAAVRLNREEIKSSPAVYSKIADSIRLAEMIQARLRG
Ga0335078_1000370625F076301GGAGGMMTDPAFGIKHQVEHLVAIQIDTLRKQSSLTSEDLDEYHSRSEEITALYRQLDEISRERFHYVHQKAS
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