NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10007169

Scaffold Ga0335078_10007169


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10007169 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16521
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (69.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015917Metagenome / Metatranscriptome251Y
F090756Metagenome / Metatranscriptome108Y
F102903Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1000716916F015917GGAGVTRKTKKVLVGNIEVTPLTAKQHRRLEERIKKRHEKLRKRYREIHGKTVDWVSYSFEDGSLYIAIRFEDKTDFSLRFSPQIVTDGIDLSDMSSGNFKLIREYYKRRDE
Ga0335078_1000716921F102903GGAMHEGCTELKEARGRTVKKMTVVYDEEFCGVEVEFEDGYSMNVDIIPAVQIRPQFLYVATGDTEIRRNYKARVHTMGLNIEPFK
Ga0335078_1000716922F090756AGAAGGMTAKRKIKYLNAHRGCPGGPRCRHCTWDSLHISVEGPHAKYIKGHRGQYRGDIDGAIDDFLATLKLDARQLLRECAKESPALRQFHLNFG
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