NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10025236

Scaffold Ga0335078_10025236


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10025236 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8813
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001528Metagenome / Metatranscriptome677Y
F005822Metagenome / Metatranscriptome389Y
F008446Metagenome / Metatranscriptome333Y
F014867Metagenome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1002523610F005822GGAGMKVSEQPNAVNGAESIADSKITHPPASEGRRSRAVTDSKPTLPRNTATRHRRNRQDNSGTSGEERFFLASGSSDGAVPALGRECGSEAEAIIDAFRERVNFYRLSEFQTRADVGPSGEPVLRKDGIRKNNPAS
Ga0335078_1002523611F001528AGGAGMSERNQIVVVLIVALLLGAFVDRSTALKIVAGVALLWTLQNQPTVFECIRKLFSLRRGEPSVREYRGGATTVHAS
Ga0335078_100252363F008446AGGAGGMLFVTAVFGGLMLLSAESRRRVITILLIGAITILGTSPAPAQAPPFCLPCVIQAVLATISVTIGGWLNQINSVLGTIFRLFQQTVWPPGKISLAKSQIQSIIMQFLGVLQSIMSINPHTATLPHPVALESVIRDRTTLAPFGRFLKPATSLPRTAT
Ga0335078_100252369F014867GAGGMRTLFPSSYDRADVLMSAGCSTFVSAALILVIPRFGILLLEILLGLFFIGCALVARKRLRRQALGQDSSDKSRDARTRWFDRYDVLMILAVVVVQTSTAGLLRKAGLAEGTVGILPLFLFAAGILLKPRAVEFIEGRRKAKQAGRNSNNLASLAAQAPASESGTKTVVHAATKNGDLE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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