NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10071897

Scaffold Ga0335078_10071897


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10071897 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5052
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000451Metagenome / Metatranscriptome1124Y
F021908Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_100718972F021908N/AMFRCRKCGYSAPAELDGCPACGADWKAIDVSHGPACPKNLLEEAMDTPNGALVRRCFRILNAKSIGLTITLTDITEEEFRVLELIEAGRQEQLKNGDGGAHGSR
Ga0335078_100718975F000451AGGMAKFQTVIKSARFVYSPYTATEMQGFAQVLADSIRARVQSGQNIYDQAAAPLKPGLPGRRGYPDYKSARGLNPIRDWTWSGHTLRCLKVLTANENRAAIGFLDESLPGRRMTASQIAAFNNRREAQWGVSPHDRQAVLAAFLSRPIVMLRAA
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