Basic Information | |
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Taxon OID | 3300032805 Open in IMG/M |
Scaffold ID | Ga0335078_11099216 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 930 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Florida | |||||||
Coordinates | Lat. (o) | 26.5065 | Long. (o) | -80.2537 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002844 | Metagenome / Metatranscriptome | 526 | Y |
F003545 | Metagenome / Metatranscriptome | 480 | Y |
F009705 | Metagenome / Metatranscriptome | 314 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335078_110992161 | F009705 | N/A | YGDLGQAFPPWPGPARGAIVQPPRPEITPSPQVLQRAADRDADREATD |
Ga0335078_110992162 | F003545 | GGAGG | MTAITLTGMGLTGVLRMTGVHDNLAHVLDHSHADETSGTWTGLAGPGHGLALGTDIDDATLQRLAAGSEIADLVWEAPDQLTAEHAQVFQAALRAHHADDSRHAGQLWENLQAIWSQAWSANYAVLEFMQKAGLTRFSPVKPQHWVVASFEHHTSPHGLPRPHIHNIVLTSLTTGANVR |
Ga0335078_110992163 | F002844 | N/A | TPYATARIAAFLDMTLWDKHYRVWRVAENDPDSDLYAESRDADSMIKYMTAHS |
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