NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310342_100109120

Scaffold Ga0310342_100109120


Overview

Basic Information
Taxon OID3300032820 Open in IMG/M
Scaffold IDGa0310342_100109120 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2588
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.8644Long. (o)-158.9436Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014154Metagenome / Metatranscriptome265Y
F054103Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0310342_1001091204F054103N/AMKIYFNANNKATLEALEGCGVKNVLLSHRYSYANINKFKNRFDSIFIVPGTKGNPEKYRDFLKKKKEYYDYATQFDVFYNMDETLKYLEKEREDGIDWTLPVLQENYLQHLSRLRPKTGDYICIGEVHGKLETEDQIRKLPQNVEYHGLAKGKYIEKRPFKSLDTSGWISAAMSKKTEVWSGNSTFSLFFGEKGRGMKAQVASTLERFSEYLEIAGISSKSVLENDYYSLLKLPIAVLYMPMCKSLGIYDINFK
Ga0310342_1001091205F014154N/AVAEDIFKIEPVGNKNLVKENKHKTISPFNSAKHLKTANLPALCNQCVYRSIEDGGNGKCPKYEADAVCSIRNDFINMINILDTRNPEDLKSMMDMLAKLSFENVLMALTQAKMDGNIPDRNTKSEV
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