NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335080_10000013

Scaffold Ga0335080_10000013


Overview

Basic Information
Taxon OID3300032828 Open in IMG/M
Scaffold IDGa0335080_10000013 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)262839
Total Scaffold Genes226 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)154 (68.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000515Metagenome / Metatranscriptome1062Y
F001328Metagenome / Metatranscriptome721Y
F005790Metagenome / Metatranscriptome390Y

Sequences

Protein IDFamilyRBSSequence
Ga0335080_10000013125F005790GAGGMFETTGTTETTETPDVLEKTPWQKYFLWFAAGSLATSLVFFIFLIPAARRGAASSAQRATQQKFSAELAANPLAAQLESTKSALQTATQERDQYKSKFDRQTILYDNTIPVDPGKLWIIPADIEPIAVGDHQVTYTHYDPKTKRETVHFHPSRQ
Ga0335080_10000013170F000515N/AMTHFPQPHPSRRAARVQLGDSVLAAIRLEDGRRTKAKLQTISVTGGLLKLPQCLGQGDFVEVAFQTQAGPVHGMAEVLSPMRKLTDSVLQPFRFVAIEDDDHRRLRTSVDHVVERSSLGLKASAFSTY
Ga0335080_1000001358F001328AGGAGVAAQFFYCTQCHKKYPTHQKLFDTLYNFTKAAPEACPICGGIRDLHVTLDFQLGAGDSDYRVISAVLPDKLESWMGGEQEEVTFYPFLVVLETSERKQFCWMPYWHVTGKESRYGQHAVCLEKSQFESLIEQAEVRELEPV
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Institute for Fundamental Biomedical Research
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