NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335080_10049044

Scaffold Ga0335080_10049044


Overview

Basic Information
Taxon OID3300032828 Open in IMG/M
Scaffold IDGa0335080_10049044 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4665
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012132Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0335080_100490443F012132GGAGVRKVLISNAHSIVALIALLQLAIPLAFATPGEDPSAVSKNGEACSNLGIYVFVGGTGGLDGLANGDQFPELLQTGHVGLYEHATAIAAAEHPASVIYAIESVFAGTGSGQAELGQVGADYFTLPPRYHYYQDVYIGHGLSPSEANVNTPHDGVPRRELQKYEEQWKEFVDAARTAGIETVAPIVGPNDPTEPKLGDHVFATNPYYALERYEALYGGAVAFDVPPNFFLSGGSGPGYQKFVVQAIQWGNENGLRTTMLLSPYPWPNNSGGKPDFFRQFSDNTFSHDTQTFVSYLEQRQAIPSEWSVDNYEDPYPHDNPAVAPESVPNTTTAVGLWLATNAPIYVKGRDKQRIVCDPPLKGGRSLSGNP
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