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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032828 Open in IMG/M |
| Scaffold ID | Ga0335080_10114463 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2993 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5065 | Long. (o) | -80.2537 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005865 | Metagenome | 388 | Y |
| F009563 | Metagenome / Metatranscriptome | 316 | Y |
| F083098 | Metagenome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335080_101144632 | F009563 | N/A | MAQGRVSLTEAEPWLDHLGSCSPCFQEFKEFRRQSTNQRRRVLILVATAAVLLFAVGGWLWVRARHSVQTTETAVLDLRERSVARGQNPSDTGQPPLEIPRTTKHLVLELPIGSKEGPYDVGLITASGDELLRATGTAELRDHITRLRVDVDLGSVRAGAYSLGIRQSGLEWTRYPIRVF |
| Ga0335080_101144634 | F005865 | GAGG | MPAPEPGPEWVLSGANPRLDPATESELSKAARSAWPKALAHVRQVQSRDPFDDDGILVAEVWESVLQSVSKTLDRMNGRRGEIGDLEAYLLGSFYHRLGRALKKEERREETIHLVSSAQELELLDKTSRGVQDDIEGKVHAREILDRMDEWSRRVWIAREYGYTWKQIGDVLGTPGDSVMLRFRRRMKILRERLFGGR |
| Ga0335080_101144635 | F083098 | N/A | VEDGINPERKKQSQSFPWFEEIDQILVVGMRYGPRGTQEAVRRVRQLTPELAPAQVWHRLRHLRDRERSRNAAPVDLTESAIEILREGYRSGGRKKTEAIKTVRALYPGLPGYAVSRFARSQGWLDEEQANKQKGDRRPWTKEEEEELFVRAGYEPVRAIAKRLNRSEQSVRFRLKGRAISARVTDGWSLRRIQQTLHISHRR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |