NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335080_10248046

Scaffold Ga0335080_10248046


Overview

Basic Information
Taxon OID3300032828 Open in IMG/M
Scaffold IDGa0335080_10248046 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1946
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008540Metagenome331Y
F049568Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0335080_102480461F008540N/ALIAHETREENRRQLADMLRQIAIERAARLPPPPELTSLETQFQVNVRSGLRDVQRAKVVQSTQILRWLRS
Ga0335080_102480462F049568GGAGVNTNPKPVWGPYQTTGGIVNYQHLHFQFPAKPFQRWHVIEDRTAPRGMRFRHARQPGEKPDPKVNFGMEELSARLEHAGVEYMRVALGNDSKSFALAEVLLTFGMQGESPEDGNWYPVIPWVRDDGFYAVCLRKKMPYRDACRLFGFDIPTGKPSVPKRIKRDVARGRTSLFGELLETRQLNQWDLLHTVMLADGETTFEVATYNPGDRWPEAWTSGAALASPRGGAILTGHPVKVGDLIQITGAMPNGQIKGNCLIWNIDHDLVAWDVKPELRAWQGQIYLSVLNELHGSPANLDVQTASNLDLAKVRDHKLIQYLCQQYACDVFDLMQDDEQVKEEIGFYIPSAWADEDGNPVINENRWKLWRMYSAGLPAMQFLNCRDAFYRTQMESPENNNPDRFRIRFREPQDLMTVKPEELAGAAVRRYLFPEPFVFDKQGCGFRRFRAGAAGPGNRPALEDPGGI
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