NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335080_10438253

Scaffold Ga0335080_10438253


Overview

Basic Information
Taxon OID3300032828 Open in IMG/M
Scaffold IDGa0335080_10438253 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1396
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013554Metagenome / Metatranscriptome270Y
F050696Metagenome / Metatranscriptome145Y
F086073Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0335080_104382531F086073N/AMRPGPEAEESQLPDLALYERLIGDGIAAADARGSAVDHVTARRLAICLAARPQSPVFTRSLVRFVHTGAVSHALKTQLRLHARSAAYADRPQAARLMEYCIARGTDLGPVGENFGAACDQID
Ga0335080_104382533F013554AGGAVTRPDKTPREPGPRRRADRPLVPDPRPGEKDRREIDDPYDLPFPDRRPHRPEYVIVVAQLRDLQPGQPPSLAELLGTRPARTRDPEPDLEAEP
Ga0335080_104382534F050696N/AYRAGMCPDCPDQSCPDCQTHLRDPQAFDQMADRMLQAARSAPDAHHGHAGPPDPLRQPNLAADKEAGQ
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