NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335080_10488627

Scaffold Ga0335080_10488627


Overview

Basic Information
Taxon OID3300032828 Open in IMG/M
Scaffold IDGa0335080_10488627 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1309
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028588Metagenome / Metatranscriptome191Y
F084579Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0335080_104886271F084579GAGGMPAPEPSPEWVLSGAHPRLDPVTESDLSKAARSAWPKALAHVRQVQSRDPFEDDGILVTEVWESVLQSVSKTLDRMNGRRGEIKDLEAYLLGSFYHRLGRALKKEERREE
Ga0335080_104886272F028588GGGGGVIPQVQARYGVNLLMEDGINPNRKKESQSLPWFEEIDQILVVGMKYGPRGTQEAIKRLRQLTPHIAPAQVWHRMRHLRDKERSRSATPADLTESAIEILREGYRSGGRKKTEAIKTVRALYPGLAGYAVSRFARSQGWLDEKPDSKQKGDRRPWTKEEEEELFVRAGYEPVKAIAKKLKRSEESVRFRLKGRAISARVTDGWSLRRIQQTLHISHRRLQRLIGSGLLRVRDPRVSEISLAEFRLRHGGVALPGMEAETDAGAC
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