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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032829 Open in IMG/M |
| Scaffold ID | Ga0335070_10000015 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 297650 |
| Total Scaffold Genes | 259 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 190 (73.36%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5008 | Long. (o) | -80.2398 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000438 | Metagenome / Metatranscriptome | 1143 | Y |
| F022248 | Metagenome / Metatranscriptome | 215 | Y |
| F025326 | Metagenome / Metatranscriptome | 202 | Y |
| F026812 | Metagenome / Metatranscriptome | 196 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335070_10000015131 | F000438 | GGGGG | MDKFEDIGKRLDEELTRLRKYVEEEVAPATEKRAAQALREASEKLSEAARKLEARVAARASQDSPEPKP |
| Ga0335070_1000001585 | F022248 | AGGAG | METMLGFAGVAVITTLALFTALALESALLHAMLRLMQPATADRRPIRLQVAQGTRLVARAFGSR |
| Ga0335070_1000001588 | F026812 | GAGG | MWAGFAVCALTIGAAVAQAQGPSCADLRAQKEKVYGFHLAQLTETQIDAKSKEIDAYWKQVQSSGPGAVGCLKQMLAEEKTDHLFQFDAASFLFQLDKSPDSLNVVKDALAQTDFQETDPANYLSLALELGQRGVDIQSLAGKILLYPNAVVHISEHALDLDSDTAALFLYGSMDPKKASDALIKQLQAEQPFVRAAAAHLLAEQMTEPAFRTLSAWRGVADIQEDYRRNDIQAVMKYEAPDALSLAHPKWTREQVLQTIAGLPHTRAEFDDVMSTKGAEFDREMREKHATQEELAKAVAESAPIYGIADHTAFQNAAVATLTADDFETIRNARRKALYNVSDESLSEYLAYTQIMIRMLNHLDLYKDYRTH |
| Ga0335070_1000001596 | F025326 | GGAGG | MSLTMQQKRGLFWALGIVTVATLASLAWHQINTLLAHCFSVF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |