NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10000030

Scaffold Ga0335070_10000030


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10000030 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)212252
Total Scaffold Genes206 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)167 (81.07%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005756Metagenome / Metatranscriptome391Y
F016298Metagenome / Metatranscriptome248Y
F025223Metagenome / Metatranscriptome202Y
F031369Metagenome / Metatranscriptome182Y
F048908Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_10000030119F005756N/AMRKKLLLISVVGGVFITLLAVALRAMGIYRPVPYLTYPGSYLMGAFVDRMLGWIPWGLGDNLISEWIVFFLLNVAGYAFVIFLILRIFYPDRSEELPPITG
Ga0335070_10000030183F048908GAGMSISKCVVRLKDSHDTEHSVVVYAESLYEAALRGLNQLSDVGWESDGETIERVEVEIHQEPTKHVVNVPKLLKWVKQDSGRPAQEAQKQKLRKLIGMR
Ga0335070_1000003070F031369AGGMHPLANTGGKESLRQERQALRLLCSNLIRPLTRVELCKLLAPAMFQDLLNRVAFEEIQTAGAIPAARLREALPARITNRGFPDFELSEFLGKNTATESEIEELFRCILELIRIGHGNDELST
Ga0335070_1000003075F025223GGAGGMLMLAKVAMGLGATAAMAGAYVFHEGVIRVDVDEHRDGGSHVHFWVPATVVSTGMHFVPADKMKDAAAQARPYLPVMREVAKELEKYPDAELVEVESGEDHVRVAMVSGKLRIDAVSHDGDIVHISVPAGVLRDVADELEAKAPGV
Ga0335070_1000003088F016298AGGAMERLGFAWKNFDDQQAIIRAADLKAGYLVTFLLFFGASTIPLAQQVLPKLRWGTPGEILASGAYGLTYLVFAAGFVWALYLISHVLTPRIARHHAKPSDGRELLYYEHVVRHPNSAAYFEAMSKVSPEEMLRNVTDQVYELAMICKAKVDSLRQFSQAFKITLVAWFVSTGAGFWIMTWM
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