NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10000085

Scaffold Ga0335070_10000085


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10000085 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)102254
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (67.37%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012383Metagenome281Y
F029349Metagenome / Metatranscriptome188Y
F092775Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_1000008514F029349N/AMQKDFAITDAYANESYVLTDDFLNDNPWHEVTAGFKTGPDTDLLLLRVVREPARPLIRGKLWIDDVRLVEK
Ga0335070_1000008518F012383AGAAGGVLPSKATAPVASQLRNLQLPSGLCERAEQKFGAQFGSLEELLTFVLRELLRDDAAQMDHAEQRILEQRLRDLGYI
Ga0335070_1000008536F092775GGAGMRYPIPSSSGDSSGVPQRRQITAEQSPQVSGSVTSSAQLGQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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