NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10000474

Scaffold Ga0335070_10000474


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10000474 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44837
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (61.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001455Metagenome / Metatranscriptome691Y
F002696Metagenome / Metatranscriptome536Y
F015510Metagenome / Metatranscriptome254Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_1000047429F002696N/AMVTPSEAATGTDKVHALIQLLRNRSYEEIRQRMYDNAPGTPWWSACKTELDIRNGEQMATALVTTSRVLEKVRASTEHFEQLADTLSQVTQQVSDLLRDTKEAGRRLEIAVYVLIGVTVAQFFNVVFQVFGRK
Ga0335070_1000047438F015510GAGGMNDSVFFATFDPLYINAPDACSLCVAQPPIFNYEYCIEEENGQRQYIKGFCCAKCAQDLLKKLATTEAKEWEAEEAALEADDLDVTDLQKRRLATFGSSAR
Ga0335070_1000047439F001455GGAMAKTAFKLKILYGEGDEEVLTAQATLIQKAGHQVQIAIGRKAVQDALRGGAFDLVLLGPTLTRDDRHHLPYMVKKAHAGTRVLVMHSDGARHHEVDANIDTGARMEVLLEKIAALMGQEVLVSR
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