NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10001841

Scaffold Ga0335070_10001841


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10001841 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24585
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020964Metagenome / Metatranscriptome221Y
F083163Metagenome113Y
F092611Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_100018413F092611GGAMANLDADGVAKLISEILTAVVAVGPVGVELFLKLESLFALGPDEQANVTAAIKAGLAADAETIAAVAAWRQQVGL
Ga0335070_100018414F083163GGAGGMRKDAIFITILMLVTTACIHKPSGPVSTWERLNVNMAALAQINDDLAKGVIAVQQAGVIGVQQAAPVLNYQEAVAKDHAAIENIFSAGSAQAVSQSDKVHVLLEEIRNQGTTLIQSGGLGVKNPKSQQTFTQDLQGIVNLAEVILADYQQLKGN
Ga0335070_100018416F020964GAGMTKAGEEFTGEFTRLGTGRQPLVVRVTDNDFQREVLEKLGRLEAKMDMLVGGPQPGRMKAAEDRIAQLEKNDIRRSVYDRLVNAAIAMAISAAIAMHDHLGIR
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