NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10002148

Scaffold Ga0335070_10002148


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10002148 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22960
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (75.76%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063538Metagenome129Y
F069147Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_1000214818F063538GGAGMNTQFQFRLNGLVITHLKVRSVVTEGIIDRWELVACHETLGEFAIDDKEDLADPALTRFVLEVRDATIPPIQRRFMPNKGWKQMSTRECLALLESAGVIDRV
Ga0335070_100021483F069147AGGAGMSRNYVFTLSFLSLLVMGEAVTARAADACQRVFEALTKVATTPSHSYTTSTAVNSGKATEAETIFANGQKYIQVHGKWIRIPVTSQDVLEQEKEKEEKGKSTCQLLRSESVNGEAATVYSLHREYDEVTEDGQMWVSKGSGLPLRVEEDVDNRGNKVMGHRSTHFEYGNVRPPM
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