NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10005240

Scaffold Ga0335070_10005240


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10005240 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15224
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001643Metagenome / Metatranscriptome659Y
F004823Metagenome / Metatranscriptome422Y
F015384Metagenome / Metatranscriptome255Y
F061167Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_100052401F015384AGGAGMSWFPASTTAADARNHASAADVMACFRDQNNVLDRLAFLITADEAIAEQAVAQACEITLQGNSPFRNWLLEWAKAATIAAAILLQGD
Ga0335070_1000524013F061167N/AMRQRGHEVATASSSTDALAMMRAQIFDAMVMDCSQDTLDIPNFTAKAQGLQPSLAVFVAEEWGNALATGLEELAPVLRMLEDDECARLAVENGLMSASLFH
Ga0335070_1000524017F001643AGGAMLGELTNIPTDTLLDMLYMILAGEVSITASDAAEIEQIQRELQRRGGVPNWSSGAIN
Ga0335070_100052404F004823AGGAGMYATKAVNGVPAIQRDGQSVLRVCDQDWEFANWLCALLNELGHIPDLLLNEQAQESPNAMDGGFGRQVHRA
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