NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10006802

Scaffold Ga0335070_10006802


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10006802 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13441
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056021Metagenome / Metatranscriptome138Y
F101760Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_100068023F056021GAGGMKTYEHELAHSHEHSKRIWRYSSGSFVQSLATALVLGTLAAVVGMAVSAALYYRHAAWYIVAAAGPLADTLVVICLATIALEQARKRSIRRALELAFLNHHVRNALTQMSMAEYVADPQQHERLVREAAGRISEALFRIANSADLTGLSLEVDLRGTQLIHEGEAREQEDGKKAS
Ga0335070_100068024F101760N/AMSPAGRFLECADCQTSFKFPDGAEFSEIAKQFESHLCGSAISISGCRTQRRFIIVRHEGEVPAMASCAKCQLKFFTPATFAHDSVGAELYLLDKFDLHECGEEPMK

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