NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10006814

Scaffold Ga0335070_10006814


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10006814 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13427
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000309Metagenome / Metatranscriptome1327Y
F010204Metagenome / Metatranscriptome307Y
F018838Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_1000681414F010204AGGAGMRSFWEQTSVLGPICRLVGKGLNDESIALKLGLTEVKVRGCIAWIVHFLELRSRQELALYASTAA
Ga0335070_1000681417F018838AGGAGMFPKQNKQQNQMCFQIHKNGAPVDGVSYTSLAEASTALEKAGQGGEVTAVDGLDRIVRRYTADECRNARNSR
Ga0335070_100068144F000042AGGAGMKNVKFVVRVSRGGDRAPAYVQRIDPSPVQMTTNRKLALMMGKLTAEDAVKCLQTSQCIPELVPVPVVA
Ga0335070_100068146F000309GAGMNPHGNLERILESAVVVSWPDLTRGVATGLIHIEYGFADGGTLDYVKVWSSLNRGHWLLACQYWMSGNSFHRAGVGFENGYRSDNLAHILDIAMQHQKSFVLPPNLGRQGLLQISAPTVQDSAAASAVIDLAFNRLSSSLA
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