NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10007487

Scaffold Ga0335070_10007487


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10007487 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12806
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000482Metagenome / Metatranscriptome1089Y
F001063Metagenome / Metatranscriptome789Y
F010257Metagenome / Metatranscriptome306Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_1000748711F001063GGAGGMETMLQGLVIAGGLTFSLAASLLIEELIFGRIVRFAFVRKPKAKEMGLRTKN
Ga0335070_100074876F010257GAGGMAKIIEFYVPSSFRKKAEKWVPADQYGKLIPFALPQKKTA
Ga0335070_100074879F000482N/AMQVSKTHLAIALCAGGLLLAVFLGYLNWLSNQGPVLARSEERDPLTNMPVNITMNPLRDRTIERTAADFVKQMRDGNCRQLLADWTKDYRRKRAQFICDSETQHPLIGWNIVEWEDAPPLVILHYKGERYLTPARNATYKDLFSITEEKKAAGWVVTKYDSFY

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