Basic Information | |
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Taxon OID | 3300032829 Open in IMG/M |
Scaffold ID | Ga0335070_10007487 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12806 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Florida | |||||||
Coordinates | Lat. (o) | 26.5008 | Long. (o) | -80.2398 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000482 | Metagenome / Metatranscriptome | 1089 | Y |
F001063 | Metagenome / Metatranscriptome | 789 | Y |
F010257 | Metagenome / Metatranscriptome | 306 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335070_1000748711 | F001063 | GGAGG | METMLQGLVIAGGLTFSLAASLLIEELIFGRIVRFAFVRKPKAKEMGLRTKN |
Ga0335070_100074876 | F010257 | GAGG | MAKIIEFYVPSSFRKKAEKWVPADQYGKLIPFALPQKKTA |
Ga0335070_100074879 | F000482 | N/A | MQVSKTHLAIALCAGGLLLAVFLGYLNWLSNQGPVLARSEERDPLTNMPVNITMNPLRDRTIERTAADFVKQMRDGNCRQLLADWTKDYRRKRAQFICDSETQHPLIGWNIVEWEDAPPLVILHYKGERYLTPARNATYKDLFSITEEKKAAGWVVTKYDSFY |
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