NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10040254

Scaffold Ga0335070_10040254


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10040254 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5226
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001643Metagenome / Metatranscriptome659Y
F004823Metagenome / Metatranscriptome422Y
F020070Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_100402543F001643GGAGMLGELMNLPTDTLIDMLYIILANDFAITATEAEEIEQIQRELQRRGEEQRWSFQAVN
Ga0335070_100402544F020070GGTGGMPTSNTYVRSASVALPVADGCRASSVVAFGCVLVVIGAYCFCPSVFAQTSDSRTAEQPTKSWTATTDLKSDNLTPQRIPVRIIESHSQNGNRTLDKRSVEIRGTDGHFQPYQDIERETLTVDASTVRTTMRTFTRDVNGVKALVQVTEEEKHILPGDDSNIVRMTYNPDVNGRLQPVQREIVETKKIGKDLEETNTTVMLPSVYGGLAPAFKTHELRKRTANDTVETEKTTWLPDVNGKWQVSEVRQATTRQEGTNRTTQERVSRLDSEGKLGEVSHVVSKESESTSGEKRSVAETYSIDVPGTTRDGRLHLVERKTSTDSSISTGERATEQKVEQTNPGDPGSGLRVSVLVDGRMVPGPSGEQSTVTIRARDSNGNFGIVAVDTTKADRIPTIQVQQKPAEKP
Ga0335070_100402546F004823AGGAGMYATKVANGVPVIHRDGQRVLSVCDQNWEFANWLCALLNELGHKSELLLSEQDWGWLTANDRAFRRTAQHA
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