NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10428482

Scaffold Ga0335070_10428482


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10428482 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1262
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033311Metagenome177Y
F044616Metagenome154Y
F047848Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_104284821F033311GGCGGMRELAKALLAQRKIVRAAALMVKLIETEPTAENLELLAEIYMREGLHDNAAVLYLRVVKMSLK
Ga0335070_104284822F047848AGGAGGMDYVHVFVLKTLCVGEDGEIKSRNVAVTLDMFEAEDHRNKGVENGYDTFVVPGNWRVEG
Ga0335070_104284823F044616N/ASAEEAFRLLQQRHSNDNQSAWSRFETELAKRTAEISERLKDELRLALSERESLTRRVEDSLREIAQLRERNQLLEGEMAKVARVGKREEMDFAEEVRSWAGVWISDKLPRNGDFILCYRAPNGDPAEPKILIDNKDKALVSEGDIDKLVRDAKERGIPVAALVARTEDQLRLVDRDLRWSRKQGVWLLRTTRQWIVRDLDLLRPIFERMREQGFDLLERNSVLAEELRRTFPEIDRIEKELGKASKAIRSVSALIVRYKERLRELCDCSAFRGSATAPEQDGLRGSEA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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