NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10982506

Scaffold Ga0335070_10982506


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10982506 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)779
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016552Metagenome / Metatranscriptome246Y
F020959Metagenome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_109825061F020959N/ALNNWKVRVYQGGGTELSSGAYPTNVTNDVVQLSITARKLL
Ga0335070_109825062F016552GAGMVEILRLEPALRMTGWMSTVSLCIDGFETGIAMIRSKAVNGIVWVILALWVHVWPGMVGAAHGQGSRKDDIVFNTRGVPLAGATVRVCAMPASGQPCTPLAQLYSDAALTQAMANPTTSDGMGNYSFYAAPGKYEIEISGPGITTKQLPNVILPSDPSAPTFNSLSTSGGISAFTLNLSGNLTVNGSTSVVGNLASGSLTLNNQGTAP
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