NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335081_10000172

Scaffold Ga0335081_10000172


Overview

Basic Information
Taxon OID3300032892 Open in IMG/M
Scaffold IDGa0335081_10000172 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)127064
Total Scaffold Genes135 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)116 (85.93%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001643Metagenome / Metatranscriptome659Y
F003233Metagenome / Metatranscriptome499Y
F006672Metagenome / Metatranscriptome367Y
F029198Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0335081_10000172123F003233AGGAGMKSREVFIVILLVTAMWHSAIAKPKRGKIEPEAPPLQRVLSGANAQSNAVLSGLITFKPEMPLGPQDLLKSYEIAMSLVADKTSTDFSVIVQAQQENQITREQAEYLLQQKYELAIMQYQVLSALHDVLRHDMEEATQRRESSLRTARADTVLVVPCPSSALGCR
Ga0335081_10000172127F006672AGGAGMKSADTLPGEPNAQIISSIINLVCPQCGGRMSEFQCEGRCRRNWLSEWEWANYSTRSSRSRRATHCSQLTHGGQRKQFESNRQ
Ga0335081_1000017280F001643AGGAMLGELTNIPTDTLIDMMYIILAGEVSITASDATEIEQIQRELQRRGGAENWSFQTVN
Ga0335081_1000017294F029198GAGGMDIRPNSGAVRVEGEVIVLHCWACGTAHCVDLELCAPAELSHMVCSNSKCRMSMFLVNELVLDNEPSCEITKKELTARTIYARFWK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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