NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335081_10000471

Scaffold Ga0335081_10000471


Overview

Basic Information
Taxon OID3300032892 Open in IMG/M
Scaffold IDGa0335081_10000471 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69786
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (72.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006195Metagenome / Metatranscriptome379Y
F007888Metagenome / Metatranscriptome343Y

Sequences

Protein IDFamilyRBSSequence
Ga0335081_1000047134F006195AGGCGGMANPAKPVKLKVLYGEGDPEIQAAQAVTIQKAGHQLETAVGRHGMEDALRKANFDLVILGGTMSRNDRHHLPYMVKKAQPTARVMVMHTDGERHPYVDGNIDTGRSMEELLSKTQAFWPAAASEARAKAAGAGK
Ga0335081_100004714F007888GGTGGMNSPSVSQDTPRRSTRVRAQIPLRISSLDPAVELSEACHTLVINTEGCGVRLSRAVEPGLAVLIDELPGGTSARARVANCVPLGSEGKFWLVGIALEEPGNVWCIHPAPADWDVPVEVYTAVPLPKKKDEWPYSLFSTKGEAHPGRK
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