NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335081_10059625

Scaffold Ga0335081_10059625


Overview

Basic Information
Taxon OID3300032892 Open in IMG/M
Scaffold IDGa0335081_10059625 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5921
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010450Metagenome / Metatranscriptome303Y
F018138Metagenome / Metatranscriptome236Y
F059237Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0335081_100596254F059237AGGAGMASICTTTPSPATLPRKRAVLDRRSVENSWLVIAAVFIVLMLIGEAALFAYAVKTMPDFLSQADVQVP
Ga0335081_100596255F010450AGGAMNSIPLYRDFGVAGELTHRPRDEPAPARRGLLRLVVDAIERSRQRAAAREIARVLGGHFGLEDRLTDEMERRALQHLTGDRGFRR
Ga0335081_100596256F018138AGGAGMTTMTLSPAGRRALPRERPPHSTSAVAALGLAVLAAVAIAIALAIPNLPDIGTIYVTVT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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