NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335081_10083776

Scaffold Ga0335081_10083776


Overview

Basic Information
Taxon OID3300032892 Open in IMG/M
Scaffold IDGa0335081_10083776 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4813
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000309Metagenome / Metatranscriptome1327Y
F000828Metagenome / Metatranscriptome872Y
F010187Metagenome / Metatranscriptome307Y

Sequences

Protein IDFamilyRBSSequence
Ga0335081_100837761F000828N/AMKETEKSIFCQQYRVVAVEGDRLLIGGILSGEVLTIINTEPEAPLTQENHPPGKLVA
Ga0335081_100837762F000309GGAGMTLNKNQSLECILESAVVVSWADLMRGAQTGLIHIEYGFAPTGILDYLKFWSSITRGHWLLTCEYWMSASTFHGTGVRFENGYQSEALAHILEFVMQHQNSFVLPLNHGRQGLLQIPTPTEEESTAAAAALNEAFDRLGSPLAERALA
Ga0335081_100837764F010187AGGAGGMHPEDLMKPDLFSEIVLLGSGGLIFVSLLLIIATALTRA
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Biomedical Sciences Research Center "Alexander Fleming"
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