NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335081_10308783

Scaffold Ga0335081_10308783


Overview

Basic Information
Taxon OID3300032892 Open in IMG/M
Scaffold IDGa0335081_10308783 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2090
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F027390Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0335081_103087833F000335N/AMPASLCTAFTELREYVQLQNQYHDGTIQRSQLAQTSRRTFRLSKRLSASVLSALYNFWVSQNAGLTPFAFYNPFDVASGQQIGSNYDPTGNETQGRVTVVFRGNWAQATDIARTNVQGLELIEVG
Ga0335081_103087834F027390N/AQAHVYASNIPTLGGIAAGIYPTPGNPNTAGGAGATYLSLNISGADAANFMTGQFVTPQFVTDQAMAAQYSSYGRTQQSANMQLPGLTVA
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Institute for Fundamental Biomedical Research
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