NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335081_10489251

Scaffold Ga0335081_10489251


Overview

Basic Information
Taxon OID3300032892 Open in IMG/M
Scaffold IDGa0335081_10489251 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1552
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013999Metagenome / Metatranscriptome266Y
F025001Metagenome / Metatranscriptome203Y
F094175Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0335081_104892511F025001GAGGMIEPSAIHLVAALIGALAVVILALSVFLPQVGDSTRHRSDSENEAKLSSLAARVPIAEIRDGLFVRRDGSFCAGWECSGIATQFADAERLEAMSSALDALIKGIRHPEIELQFRYIIDCETPRVLESRKALGNYANSPAAWLEENRLSFWRSAIDAGQMRSIKLLAFLSWKPKHTWETRSAASRFAAALWQGLVQDGFGKFASILRAALKETRTSAL
Ga0335081_104892512F094175GGALEDWGFVIAWAIVMRLIGDHIHRVFVGFMPVSTLMTYGSAALLVVLIRWAKHGKPRGYLVAWIQHYFRPKAHNARCGAPTLPYLIEDEQ
Ga0335081_104892513F013999AGGAGGMFAVIGRKRRIQLHRFARAVGSGIGMLFLASPAFAQIGGDQVTSFLSNALSYAQGLGIFGAGFLVIWAVANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG
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