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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032893 Open in IMG/M |
| Scaffold ID | Ga0335069_10000008 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 387728 |
| Total Scaffold Genes | 340 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 215 (63.24%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5008 | Long. (o) | -80.2398 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000042 | Metagenome / Metatranscriptome | 3762 | Y |
| F000525 | Metagenome / Metatranscriptome | 1049 | Y |
| F005269 | Metagenome / Metatranscriptome | 406 | Y |
| F032775 | Metagenome / Metatranscriptome | 179 | Y |
| F052109 | Metagenome / Metatranscriptome | 143 | Y |
| F087285 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335069_10000008130 | F052109 | GGAG | MARPFAEVVRVKNVSRSGAVLLGVRAKLSAGELLDVQHGSQQARFRIAWASSGEAGIEALSSEPCIWDATLSKTLNPVGAG |
| Ga0335069_10000008188 | F032775 | N/A | MARRPTLETPDVLTEEELKQLRHNLAHLSTDGVRQFYERAYQDCRLMYDKVPSPCKIQTLVQVWKQLRKWRWG |
| Ga0335069_10000008212 | F000525 | AGCAG | MRTAKMLFLVALSFTSACSPRDFLTRRLAADLISAAEPFNAPQTFWLNTGIVSNKDFSSPESMVLQRRGWITGNEEKCPPGVEPAPCWDIVLSPHGVDTIRPLIASGSSGNGPIAIQAARRELIAITGISKAGSFADVEFTWHWVALNKVGEALYDSGVHYRSAVAFRSYDDGWRVVTSAVHGNQPLEEALRNAEPASP |
| Ga0335069_10000008281 | F005269 | GGA | LTINDSGGSYAIICYNIRTYRSAGVVAVVGGKRQAELEMKKFEQAQSSSDRHEGWRYLLDKTDLKAGTNPAEATLYRQAELEKRESKALREPDTSNFSSPHRQR |
| Ga0335069_10000008293 | F000042 | AGGAG | MKNFKFVVRVMRGAAHPPAYVQRVNPTPIQMTSNRKLALIMGKLTAEDAAKSVQTSRWTPELVPVRVSA |
| Ga0335069_10000008296 | F087285 | N/A | MVGGFWYSVSSFRLVSGFVVAAAAAVVLTQAARMRRYVWMTMFLLVVCLFNPVIPIPLSSYIFGMVSALTVLLFFFSMELLQPKRRLSIESITDRMTRSESL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |