NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10000134

Scaffold Ga0335069_10000134


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10000134 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)125630
Total Scaffold Genes111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)84 (75.68%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010068Metagenome / Metatranscriptome309Y
F079956Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_1000013420F010068GGAGGMNVKGIFFVITKTAMIQVFGEERWNAFMARMVEKDAYFKTAIISITPIPVEKEIILFDEMCKEFFNNDKRQYETFGRTGAKYALSPGGTYQSYLLNKDIKQFVEFVLPKLWSTYYDGGVATARLENNVAHIKLTGIDIKNEYFEQMVKGYFQQALKVFGKKSVVKKIRSRASGDEDIYFQLELKDA
Ga0335069_1000013478F079956GGAGMNAKGIAYVVTKNNMIAAFGEERWADFMAKLAKKDSYFGTVIMSITPMPIEKLIICFDEMCREFFNNDKMQYEKFGKGGAKAVLAPDGPYRSFMLTKDLKQFVETILPKVWSTYFDSGVTTALLVDNVAHVKITGLLIKNNYFEYLVMGYFQQALKMFGKKSSAKRIRSLASGDKDIYFQYELRDA
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