NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10006342

Scaffold Ga0335069_10006342


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10006342 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17200
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027194Metagenome / Metatranscriptome195Y
F032246Metagenome / Metatranscriptome180Y
F061068Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_1000634221F061068N/AMTVHERFVEDMNGAGIHTERYLGRFFWEGPAVRSDEQNGPTLSDIIKVTAVLLQWDRLDFNYIVYPVGNAKAGWNANVADAEDDEVETDGYNNAYAAKTPKHSDEED
Ga0335069_1000634222F032246GGAMDKVTVEIDSRWAKIVRSPLYWIVAALQGVSVSFAPLFLYWSGKGMFPHGSEWLVVPSCFAIILFVGLFYMLLGGAVIGELKKKKLSA
Ga0335069_100063429F027194AGGCGGMTIQITRPEVEALINQRRESGGFKDAEDVILQALRASGTYGPEVERERRAAIERLRIFGKTHGLSLGGMTIRELRDQARP
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