NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10008399

Scaffold Ga0335069_10008399


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10008399 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14784
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002835Metagenome / Metatranscriptome527Y
F005269Metagenome / Metatranscriptome406Y
F012059Metagenome / Metatranscriptome284Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_1000839913F012059GGAGGMRKQYLHLSAYSCDKCDGPVVSGSLAVRENEISKETDVRHVGAICLSCGPRQSKGTEESVTGNFPPIQWEPMREIDVTHTATAFREMLKRVT
Ga0335069_100083998F005269GAGLFRLHLFFVGLIANGFLLTINDSSASFAIIRYNLRTYRSAGVIAVIGSRHQAELELKRFEDAQNSSDRHDGWRYFIERIDLKAGTDLTEATKHRQAELEKRESKALRETDASNFSSPDRQ
Ga0335069_100083999F002835GGAGMNPAFPPCLNPTEWTTLYRAVIHETNQSLLSQRVSEAEDAVIERGREISYDHRAADEKDALEDALYVLRAYRSARQHARTCIPL
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