NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10008743

Scaffold Ga0335069_10008743


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10008743 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14452
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023468Metagenome / Metatranscriptome210Y
F052667Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_1000874312F052667AGGAMSDPIGFVETTVDASPGGGQVRDAVALRFDPSRRVNLRFQISLTGDDALEALRYARRSMIREERTRGLEWDEPSMEDPSLSGNEIRWYALASQAAWCREKVAELVERANRALAEMGTR
Ga0335069_100087436F023468GGAGMKKNLAAAVLATLVLARVAFGQGSDSRIYQISSMLSGTFEGSTPGNHLTLNLSPVTLEPARPYDLFLSVVGTFEKDSVVQQGVIRLETQGKDIYFTYIPHFSPQVTALSNDAGRFTERELSSACSFIMNPKGDGFGGETLGTTTCALAMRGAIGKWSVELEPGAIRIRNSDSGETLRFRKTAPK
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