NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10012619

Scaffold Ga0335069_10012619


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10012619 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11877
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027820Metagenome193Y
F040433Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_1001261911F027820GGAMPENENQLSKRAARRIIQRAFVLMGRDKAWRHYIRETELSTLWVLEDWDLAWTVLLRRSKFEVERCAAKHPDVTLTWTTADEFFDLTEAGERGSQHVQFDPPDGQRRFFEPLLRGFFNALRHVLDNPVDDTGESLL
Ga0335069_100126195F040433AGGAGMNRKLTLVAVCLTVLLTSSLAAAGGKKSKGGPITGTWECQAHGGSQGDMAFTLYLTQNKEVVDGSVSSPMGGTQISSGTYKRNMLEIHIDTPQGNYVLMGKYKKGTMNGTWSTDSDKGTWDGKKQVEAKK

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