Basic Information | |
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Taxon OID | 3300032893 Open in IMG/M |
Scaffold ID | Ga0335069_10154112 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2843 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Florida | |||||||
Coordinates | Lat. (o) | 26.5008 | Long. (o) | -80.2398 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004352 | Metagenome / Metatranscriptome | 442 | Y |
F006575 | Metagenome / Metatranscriptome | 370 | Y |
F012935 | Metagenome / Metatranscriptome | 276 | Y |
F076058 | Metagenome / Metatranscriptome | 118 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335069_101541121 | F012935 | N/A | YGRPSETSARLVRLADKGPDAGIHVVAWTDGYATAERALRRAGIGFFGLRAVLRVLSPAESDALLGVAAAASLDDDRALYRDTEWPVEQVEKFKPYSIASLNAFATEGFLSTHD |
Ga0335069_101541122 | F006575 | GAG | MTDAASPYLALRQAVRPAILACRLLAGDQERAGKLATECEDLLFETSELLKAAGRARLLGTAPGPVPGTAPIGPNDDGGERQAQLVDAYADVGLLWAKVVGSCLALAGALIERGDWDDVRALASFLASSGEETAAAELRLVLGNAIWQRHSEQLRVISNTMPPAAIGGAISALRAVLREVPEEYPDRNREVNRFLPPLAAAIGALMKEQRVEIPYHSRVEHIATGGVAKYPDIVAMSLDELAAEFEGLCARPDRETT |
Ga0335069_101541124 | F076058 | N/A | MPSKIRPQLELRQGEYAGCRERAAQAGPDDLPVDCSGYARAVEQATERIEQIQLWQQRIDAEASEFSGVAGRFAALLADDLPRMEEHLAAMIASLEAARRVQAPS |
Ga0335069_101541125 | F004352 | GGAGG | MISRPEQDGDQQLRLLADAWEQAAEHWRDGPARQFGEGPLASLLQDSRDYLEALRTLMDLLDAAERETAGQHSGYLL |
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