NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10298647

Scaffold Ga0335069_10298647


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10298647 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1918
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007120Metagenome357Y
F015428Metagenome254Y
F047437Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_102986471F047437N/AQGHEANGLPPGSREFKTLFTEVASKVQKYSNASGEPLDALKARLPALCALERLANPTPSVPRNKTGLTLGIFIAAVLGPIGIGALVGLGTGMAHWIAHLFA
Ga0335069_102986472F015428AGGAGGMTGILELFALFEMVTGIGFLVRWRSRLLASKVNYFHPLHNRKSPIDKLVRGQTGLVVTRQDQLYVKLADGLTAVVRRLVTLDAFRQLMRALALPGSPLRRKLSRRKRP
Ga0335069_102986475F007120AGGAGGMKTLIIAISVVCAAVAYYFGLRYFTGQDLGFTPAKKYVRNLAKNLLHTEITAAREAGATPSATTEQTA
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