NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10630492

Scaffold Ga0335069_10630492


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10630492 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1227
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N
F010139Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_106304921F002261GAGGMPNWPTIEAIVDGVMLKTFGEPVVYQPVQAGAAQGNPLTVTAIRHLRPREESGASASFEEISVNPSDFTNPPAKGDWVTAWGTQFVITTVRQPDAYGMLNLALLQRS
Ga0335069_106304922F003186N/AVINPKTILGEWVTALQSCPDLVTAIGGDANDIRAFMEGLATDNNLRLAILQMPPGSILVAWNGTTPRRLAGGALHFAHRFSLYLRAPEQDSTATYADLFWLLVSAKPTSAPSWESLLHLQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGG
Ga0335069_106304923F010139AGGAGMDSVFMRSPEGDVKEVEATAEKLTPLMVAGWHQVPAPAAASQKPVVAAEEEKLHGEHQ
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