NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10794667

Scaffold Ga0335069_10794667


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10794667 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1067
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008540Metagenome331Y
F013506Metagenome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_107946671F013506GGAGGVNYQHLHYQFPANPFQRWHVIEDRTAPRGMRFRHARQPGEKPDPKVNFGMEELSARLEHAGVEYMRIALGNDSKSFALAEVLLTFGMQGESPEDGNWYPVIPWVRDDGFYAVCLRKRMPYRDACRLFGFDIPTGKPSVPKRIKRDVARGRTSLFGELLETRELNQWDSLHTVMLADGETTFEVATYNPG
Ga0335069_107946672F008540GGAGGLRTYQPEYALIAHETREENRKQLADMLRQIATERAARLPPPPPELTSLETQFQVSIRNGLRDVQRAKDVQSTHILRWLRS
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