NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10000003

Scaffold Ga0335074_10000003


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10000003 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)675613
Total Scaffold Genes572 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)364 (63.64%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Associated Families14

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000214Metagenome / Metatranscriptome1570Y
F000269Metagenome / Metatranscriptome1410Y
F000725Metagenome / Metatranscriptome918Y
F000882Metagenome / Metatranscriptome849Y
F000949Metagenome / Metatranscriptome823Y
F003774Metagenome / Metatranscriptome469Y
F003916Metagenome / Metatranscriptome462Y
F005311Metagenome / Metatranscriptome405Y
F008092Metagenome / Metatranscriptome339Y
F018979Metagenome / Metatranscriptome232Y
F020588Metagenome / Metatranscriptome223Y
F023747Metagenome / Metatranscriptome209Y
F045224Metagenome / Metatranscriptome153Y
F074116Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_10000003100F000949N/AMNSSEQTGRGDGWWIYLLAALCGLGAGWADVEVDDLLVTALLVLASCMALGLWRRRWPWRWVLVVGMFVPLMEFAAYRILTVKPTRAQVYGSFLAFFPGIAGAYGGSMMRAVIDNLREGK
Ga0335074_10000003103F000725GAGMNRAMKTLRAMQWSLLGSILLYGIVGEFFGRGVRGVDPSVSYVFTTLGVAIVGAIFVVRRTLVLRAAESLATHPDDNLSLNHWRTGYVATYALCEALALFGLILRFLGCNFQQCVPYYIGGFVLLFFFRPQQPASA
Ga0335074_10000003131F023747AGGAGMRSLSSALTATLLLGLSAAVAQNSAPMRWAEGAPNATSDVENDHKIEGLKTDDIHIFVSFADVKETEYNRVWVQISNHGKAPVDFNPQSALLLKGDKTVRPEVPDKAANSIQKFGEAESQEMSSANCNMMASSGHSSPVPHAASIGAGGAGCGANDSQVQMGKQVAAFSAQQAEWVRNNALSRKALAPGEEAQGAIVFRKDKKPADYILRITVGSETFEFPVSAQNKRPSYD
Ga0335074_10000003132F023747AGGAGMKGSFLCAVLTFALLPSNAAFSQGHSSGSLRWAEGAPNATSEVKNDIQIEGLKTADAHVFVSLSDIKETEYNRVWIQIYNDGKAPINFDPQSAILINEKDKTVRAEVAAKAANSIQKFGEAKSQELSSAHCENMVATQCQPTVSELQVSKQVAAYSAQQAQWLRDNGLTQKTIAPGANVEGYIPFKKDKKKMNYILKVTVGAQVFEFPVHADNKEPSFD
Ga0335074_10000003168F074116GAGGMKNIFPALALVALGLTVASAKDSATQGTIVSENSVPCGSQAKGKKTSEMMCQEYVIRTATTDYHVRQEKEAHKEILPISAPVELSLSKDRMKFKVNGKSFEMLIVSEAAAPAPGTAAPVPPTTSKP
Ga0335074_10000003169F000214AGGMKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEAMADMAKPALATAVNGPQPTARIPIPTSSAIPAPQPVRAAAGWEDSAKRWP
Ga0335074_10000003303F000882N/AMAQAILSVAVWKPVSEMEAASLATLREITSIVARKAYGRDLLYRDRESHYVLLRYWKSEDARREAMEDPELLRCWARLGNEIQIVKVYETLAEVPLENGK
Ga0335074_10000003319F003916GAGGMNRLAGALIAYAVLGVLTWLTISDSRIRGVTLVILAMFAVKSWIRRKDVMHGSGSDAE
Ga0335074_10000003355F008092GAGGMSTTPSTTIVTNLKDVTAPTANTIADSNAAGLDVNGMLADALTKAYELKSCLSLLVEHTDSADPNLATLNDILASLV
Ga0335074_10000003356F045224N/AMQPRCMSIIRMTEESGTQLISSGAKQGRAATYSTKDFQLDVLGQLSEMQALTQKLQESLTNELRKNEEHGKLLRFDGRTLVAIGAIALSLTGYVLQDARNTSRRDTEIETTKARVTTLEGIAATNTEGRIRTEVELGELRQGQNEIKALIQADEGPSKKAAPKK
Ga0335074_10000003360F005311GGGGGMGGGICAAAVVRAATAMLTALGGDQVSLLLPATATASDAAGQLGLVDPGVQEVTISPVVIRNLPVGNLGPRRRIEVTMPASAITDQLPALGMATPEDLFNTVLGLMYGADLFHIETVVPENFAGTAYFYVVTAVE
Ga0335074_10000003406F003774N/AMPRKSDKPLKHRPPRIRVPHQQKAIFTLHDQKFVGIVQRLSLTGGSALLVKGPAAEGTLGEMALATVFGKVTAHIEFLHTGADGVPLAQAFAFVTMDDVSSKRFRMAVEQMYSSAFSDVAQKQTPIDAAFETLRESVRLLSGILGSGRRPRPKA
Ga0335074_10000003430F018979AGGVLSRSLVKPLFGWTTCWACLTICVVACSTHANQPQAVDPVTVLQAIPAADSTSYDRIDNMKKWRNPYVIVRADGVALLDTADSAEIILKPDEVLPALARLPATNWPYGRVVAAAESTRSMSDQDGIAIRRNKGIIGGILEGAHIEVKWVPAS
Ga0335074_1000000361F020588GAGGMTIDERLEALTRNLELLSLESEKHDRQLDRAAKLVTEVAEGTARLLRVVEMHEHRLDSQ
Ga0335074_100000038F000269GAGMQTSMKKLLRVYAPLLLVLLPSVGSAMASEEPTAKPTDVPATVIAHLPLPQATGTQMLLQKENGKQYLYVQQAAKQGFMVVDVSKPDMPNLLKRTAQSEQATAGNLDIVSPDVAIAQAPEKTPTTLTNSNHPTETVRVLDLTDPRNPKTLETFNKVTSILPDGGHGLIYLTNNDGLWILRYNRPARLEPALHKPLCNSESEIMAMPPDCD
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