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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032895 Open in IMG/M |
| Scaffold ID | Ga0335074_10000280 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 77733 |
| Total Scaffold Genes | 102 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 90 (88.24%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5059 | Long. (o) | -80.2517 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001596 | Metagenome / Metatranscriptome | 666 | Y |
| F006399 | Metagenome / Metatranscriptome | 374 | Y |
| F006672 | Metagenome / Metatranscriptome | 367 | Y |
| F014420 | Metagenome / Metatranscriptome | 263 | Y |
| F020070 | Metagenome | 226 | Y |
| F029198 | Metagenome | 189 | Y |
| F033229 | Metagenome / Metatranscriptome | 178 | Y |
| F105952 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335074_1000028012 | F006672 | AGGAG | MKSFETLPGESNARIISSIINLVCPQCGGRMEEFQCEGRCRRSWLAEWEWANQATRSSTSRVCGSRARSLR |
| Ga0335074_1000028024 | F014420 | AGGAGG | MVESAEALRNWRELYNAALFEADTCKIPSRIEEARRALAFRSRELFETSPNYDGETEAIETALYALQALENCLRSNTKDRRRAARAG |
| Ga0335074_1000028038 | F001596 | AGAAG | MSWFHASTPAADDAREHASAAEIVACFRNERNLLHRLSFLITGDQTTAETAVAQACELTLQRNSPFREWLFEWAKVATISAAIPLEGDAIRRCEATYKDRSCQHVEHACQFDDEQRADSLALILQMDAEKIIAELDPLCRAILVLRIAIRSSIQDCSLRLNVSRAAVLAANCLAMTWLDCRQLQPPEEDHKVSQPLQEQERRNQLTDLGPRLLCLNRI |
| Ga0335074_1000028040 | F006399 | AGG | MAASALNSRVQSLVTEYGVFWQFWPQFEQIKSERRLVGFEVELIGSHKSDGDHVDPRCPSCRRVRAVLLAIADLLPRDSRLSGNSCTYNIDSHSNSILCLPALGNRSAVSVSIQFSWSRSNGQSFETDLLNEIKTFLNRWGLHQR |
| Ga0335074_1000028043 | F029198 | GAGG | METESDSRAVRVNGEVIVLHCWACGTAHCVNLELCLPGELAHMVCSNSNCRMSMFLMNELVVDDKTSRQMTRELNARATYSRFWK |
| Ga0335074_1000028046 | F033229 | AGGGGG | MYSTKSLDGVPTIQRDGRSVLGVWDQNWDFANEICDLLNSLDDDPHIFLTEHDRKWLKAMDRAFTKVQHA |
| Ga0335074_1000028048 | F105952 | GGAGG | VSTRREAPNTRRIDSTETSAGQVSRERRGSTVTVLAIEQAFAELGIHASLSDIVTKAQSIESGSIKSRSRRKRERTC |
| Ga0335074_1000028065 | F020070 | GAG | MSTTASMRPASVAFYLGSVLVLTIGAFCCFGLRLSAQTSGFQTNQRQSTTDLKSDDLLPSRIPVRIVESYSENGDRTLDKRSVEIRGADGGFEPYQDIEKETLKADASTVRTATRTFARDVNGRKSLVQVTEEEKHILSGGDSNVVRVTYNPDVNGRIQPVQREIVSTKKVGDDLEETDTTVMLTNINGGLAPAFKTHETRKRATNDTVETEETTWLPDVNGEWQVSEIRNDVTTQDAQGRKIEESISQPDADGKLSQISRTVSQESESTSEEKYKRLEAYSIDVPGTTRDGRLHLVQRKISHERSISISERATEEKVEQINPGDPNAGLRVSVVADGAMVSGPSGEQCTLTIRVRDPNGSFGIVSVDTTKSDRIPTIQIQQTPSEQPK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |