NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10001131

Scaffold Ga0335074_10001131


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10001131 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36428
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (69.70%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000451Metagenome / Metatranscriptome1124Y
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N
F023143Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_1000113120F002261N/AMSDWPTIDAAATAVMQQTFGEPVVYQPVQSGAPVGDPLTVTAVRHARLREESGATGNFEEISVNPSDFPNPPAKGDWVTAWGTQYVVTAVRQPDAYGMIAVTLLQRS
Ga0335074_1000113121F003186N/AVINPKTIICAWVTALQSCPDLVTALGGEPANIRSFMEGLATDNNLRLAILQMPPGSILVAWNGTTPRRLSGGALHFAHRFSIYLRAPEQNASATYADLFWLFVSAVPTGAPSWSSLLHFQIDPGCYPMDLDLPSAQRNTVVVAADGTTLDYFEVQATLVEQGNPGGE
Ga0335074_1000113122F023143AGGAGMDWVFMESPTGEVKEVEATAAALTPLMVAGWRQVPAPPATGPKTAAPAEEKK
Ga0335074_1000113127F000451GGAMARFQTVLKRARFVYSPYTATEMQGFGQVLADAIRARIQSGQNIYDQAAAPLKPGLPGRRGYPDYKIARGLQPIRDWTWSGHTMRCLKVLTANENRAAIGFLDEALPGRRQTASQIAFFNNQRERQWGVSPRDREAVLAAFLARPFVSVKAA
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