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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032895 Open in IMG/M |
| Scaffold ID | Ga0335074_10007807 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14847 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (92.86%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5059 | Long. (o) | -80.2517 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007854 | Metagenome / Metatranscriptome | 343 | Y |
| F017111 | Metagenome | 242 | Y |
| F018762 | Metagenome | 233 | Y |
| F052529 | Metagenome | 142 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335074_1000780710 | F052529 | GAGG | MRNLARFAVLVLLVGAGCCACLAQSHTIAAITQPSSADKGVVPLGYPYSISTEPHFAIFVEFPKADSIRRIALGDSNYFLAEADKTDPHYAIIKQIQAPTTKGKPPVETNMLVYMASGRVVDITLKAGKLADTAYSIDYVLPIAPHKVDPEKADPPPISKQELENELRDQERSELTEKMIGEVEKTPKSQPGVTAGGLDLRFYSVKRLGLLALVSFDVENTSSGIIDLEDPQINLVTANDNQKDRKKAPAKVDPVEVIRSIVSPKQLAPGARASCLVEFNPPVHDSDQQVVLSISNRAMADKPARYRLE |
| Ga0335074_1000780711 | F017111 | AGG | MATTTLTLEKTRKAKSELGDYTEFYTHLALQARRASRVALVACGVALVALVSAILAQLRPPVLLRVQDGQVSSLAGSGVQVAETAAQQEPDSAEKLAFVNTFLNRFVNIDPLTVKRDTILALNQMTYGLRQHVLMQLNQESFVDTVTENNLTSTLTVKSAELVSGDPYTVIVFGRKRMTTLVNGQENEKNLLMKYTIQLAPVPRAAANGWTGLEIADYKEEVLQ |
| Ga0335074_1000780713 | F018762 | AGGA | MRLRHKKSAVLLVAAAFILLVPLTARAFIGTVPVIDWTAVVRIGQEIGISQGTLNTLGLYVQQYSRVNAGVQNGIRLVRGRQLEGVLNQTVGSEFPQFQQLQRDFNSALVDPAILRGDLEGTYGTAPTTDFPLERKQRIDATDATATLGLLEASRAELVSQQEDLDADDIESDAAVASPGGAAKLSAAANGAMLRSQAYNQRLTGELMRLQALNIARENSIEKEQEQIREGQVSAVSNLVGSMQLSYGIGDLRGQ |
| Ga0335074_100078072 | F007854 | GGAG | MNTLIANQYGRVQGEAGGCGLTLSVTAQTPRRESVALETRIDSVEQQLHLLAILRAVERRIEQFQLHDGKTPESAEQHSPFDETICGEEDLFRSNGAASKNKIYGRFSQFLVYEQVDQGRLRVFFAVRDEAKRVARFDLHPGEVQAMHSLARRALFACEQIDLLLRDELSVSVTLSACCHGLRFEVQVPLWRSEFVISKANDLATLAVFTRRAINQEKTIPLKFGGEVNQLSLRRRNDGQVLAEFEHNGAMERFALSTLQLYELEVLTQYALHRAFEPSSFAAGSPLPPDTATAA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |