NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10007913

Scaffold Ga0335074_10007913


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10007913 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14750
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005419Metagenome / Metatranscriptome401Y
F026317Metagenome / Metatranscriptome198Y
F070346Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_1000791310F026317GGTGGMGFFVQFLELLAVFLPDPSTLGLFTLALFNLWCTTKTLHVAGTLNTETALGVSLALGYLVTITINIFEILQAPARSTITTSSAPEPRVEQAGRESLSCTRKAQFAGREGAVIES
Ga0335074_100079132F070346GGAGGMKRLFPPTSLRWQRLLHFVSWGALIVLIFASAPFLFDLIGRGIGWMIGLVPHPDELWKECPWCF
Ga0335074_100079137F005419AGGGGGMVAAGATEAVGQGKDAEVDRSPRGTRKVRAGLTGGVEVQRFFLAKTGGSNGVPEFSKEVPAEPEAMVESLKTGLSYFIVSEWRGVADFSGKKPQLGREPARSGPKPG
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