Basic Information | |
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Taxon OID | 3300032895 Open in IMG/M |
Scaffold ID | Ga0335074_10009783 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13395 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (80.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Florida | |||||||
Coordinates | Lat. (o) | 26.5059 | Long. (o) | -80.2517 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005311 | Metagenome / Metatranscriptome | 405 | Y |
F045224 | Metagenome / Metatranscriptome | 153 | Y |
F045437 | Metagenome / Metatranscriptome | 153 | Y |
F092540 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335074_1000978311 | F045224 | GGA | MSEEEYGKQTASVAKQARSGPYTTKDFQLDVLGQLAEMQALTKTLQESLTTEMRKNQEQRKLLRFDGRTLVAVGAIALSLTGYMLQDARNSSRRDSEIETTKARVTALEGIAATNTEGRIRTEVELGQLRDGQAEIKALIEAHDLSTRRTQQRAMTGGTGAAANRGR |
Ga0335074_1000978312 | F045437 | GGAGG | VQPRIEDVEAVELRTIDWHFERNVLEKLSRLEAKMDALVGNGQPGRMTLAENRIVELERNDVRRTVIERFVNGAIALLVSIAIAMHGHWWK |
Ga0335074_1000978313 | F092540 | GGAG | MSTTASTTIITNLKSAAAPTGNTLKAANAAGIDMAGMLALAQIKALELKICLSLIAKLTDAADPNLTTLNNVLASLV |
Ga0335074_100097837 | F005311 | GGAGG | MGSGICAAALVRAATALLTALGGDQVTFLLPGTAMASDAAGQLGLVDPGVQQVVILPVVIHNLPVGNLGPRRRIEVTVPAEMITEQLPGLGMGTAEEFFNGVLGLNYGTDLFHIESVVPENFAGTAYFYLVTAVE |
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